mgkit.mappings.cazy module

Module containing classes and functions to deal with CaZy data

class mgkit.mappings.cazy.Kegg2CazyMapper(fname=None)

Bases: mgkit.kegg.KeggMapperBase

Class holding mappings KOs->CaZy

columns_string = 'database(cazy)'

map_kos_cazy(kos, contact, skip=False)

Map a list of KOs to CaZy ids

query_string = 'database:(type:ko {0}) AND database:(type:cazy)'

mgkit.mappings.cazy.download_data(contact, kegg_data='kegg.pickle', cazy_data='cazy.pickle')

Function to download CaZy data