mgkit.mappings.cazy module¶
Module containing classes and functions to deal with CaZy data
-
class
mgkit.mappings.cazy.
Kegg2CazyMapper
(fname=None)¶ Bases:
mgkit.kegg.KeggMapperBase
Class holding mappings KOs->CaZy
-
columns_string
= 'database(cazy)'¶
-
map_kos_cazy
(kos, contact, skip=False)¶ Map a list of KOs to CaZy ids
-
query_string
= 'database:(type:ko {0}) AND database:(type:cazy)'¶
-
-
mgkit.mappings.cazy.
download_data
(contact, kegg_data='kegg.pickle', cazy_data='cazy.pickle')¶ Function to download CaZy data