translate_seq - Translate Nucleotides to Aminoacids (Deprecated)

Overview

Deprecated in favour of a similar command in fasta-utils - Fasta Utilities

Translate nucleotidic sequence in amino acidic sequences

Options

Translate sequences from nucleotidic to amino acidic

usage: translate_seq [-h]
                     [-t {bac_plt,drs_mit,inv_mit,prt_mit,universal,vt_mit,yst_alt,yst_mit}]
                     [-p PROCESSORS] [-n BUFFER_SIZE] [-v | --quiet] [--cite]
                     [--manual] [--version]
                     [input_file] [output_file]

Positional Arguments

input_file	input file with aa sequences Default: -
output_file	output file with aa sequences Default: <open file ‘<stdout>’, mode ‘w’ at 0x7fa31cd94150>

Named Arguments

-t, --trans-table
	Possible choices: bac_plt, drs_mit, inv_mit, prt_mit, universal, vt_mit, yst_alt, yst_mit translation table Default: “universal”
-p, --processors
	Number of processors to use Default: 1
-n, --buffer-size
	Number of sequences to read/write at a time Default: 50000
-v, --verbose	more verbose - includes debug messages Default: 20
--quiet	less verbose - only error and critical messages
--cite	Show citation for the framework
--manual	Show the script manual
--version	show program’s version number and exit