mgkit.counts.glm module¶
New in version 0.3.3.
GLM models with metagenomes and metatranscriptomes. Experimental
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mgkit.counts.glm.
fit_lowess_interpolate
(endog, exog, frac=0.2, it=3, kind='slinear')¶
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mgkit.counts.glm.
lowess_ci_bootstrap
(endog, exog, num=100, frac=0.2, it=3, alpha=0.05, delta=0.0, min_alpha=0.001, kind='slinear')¶ Performance increase with the value of delta.
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mgkit.counts.glm.
variance_to_alpha
(mu, func, min_alpha=0.001)¶ Based on the variance defined in the Negative Binomial in statsmodels
var = mu + alpha * (mu ** 2)